get_kegg_pathway_genes: Get genes for a kegg pathway
In jacobheng/cellwrangler: Supplemental toolkit for single-cell RNAseq analysis

get_kegg_pathway_genes() is a wrapper function around keggGet() that retrieves gene names in a KEGG pathway.

1	get_kegg_pathway_genes(pathway_name, kegg_pathway_df)

`pathway_name`	a KEGG pathway name
`kegg_pathway_df`	a kegg pathway database that is produced using the cellwrangler get_kegg_database() function using "pathway" as an option.

a list

1	pathway_genes <- get_kegg_pathway_genes("Pentose phosphate pathway", mouse_kegg_pathways)

jacobheng/cellwrangler documentation built on Aug. 12, 2019, 6:49 a.m.

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