load_10X_matrix: Load an expression matrix from a directory of...
In jacobheng/cellwrangler: Supplemental toolkit for single-cell RNAseq analysis

Description Usage Arguments Value Examples

load_10X_matrix() loads an expression matrix as a sparseMatrix from a directory of 10X Genomics scRNAseq data created using the cellranger pipeline. Either the raw or the filtered matrix can be loaded.

1 2	load_10X_matrix(cellranger_outs_path, which_matrix = "raw", cellranger_v3 = T)

`cellranger_outs_path`	the path to the "outs" directory in the cellranger library folder e.g. "/mycellranger_library/outs"
`which_matrix`	must be "raw" or "filtered" to specify the raw or filtered matrix to load respectively.
`cellranger_v3`	logical; if cellranger version 3 and above was used to produced matrices.
`cellranger_filter`	whether to use the filtered matrices from the cellranger pipeline as the expression matrix (i.e. as cells)