Description Usage Arguments Value Examples
View source: R/summarize_cds_exprs.R
summarize_cds_exprs() takes a monocle CellDataSet object as input and obtain summary statistics for each gene for specified groups in the dataset.
1 | summarize_cds_exprs(cds, group, gene_short_name = T)
|
cds |
a CellDataSet object |
group |
one or more column(s) specifying groups to obtain summary statistics for e.g. CellType |
gene_short_name |
logical; whether to attach gene_short_name as a column to output dataframe |
a dataframe
1 | dat_summary <- summarize_cds_exprs(dat, c("CellType"))
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