summarize_cds_exprs: Get gene-level summary statistics for CellDataSet object

In jacobheng/cellwrangler: Supplemental toolkit for single-cell RNAseq analysis

Description

summarize_cds_exprs() takes a monocle CellDataSet object as input and obtain summary statistics for each gene for specified groups in the dataset.

Usage

summarize_cds_exprs(cds, group, gene_short_name = T)

Arguments

cds	a CellDataSet object
group	one or more column(s) specifying groups to obtain summary statistics for e.g. CellType
gene_short_name	logical; whether to attach gene_short_name as a column to output dataframe

Value

a dataframe

Examples

dat_summary <- summarize_cds_exprs(dat, c("CellType"))

jacobheng/cellwrangler documentation built on Aug. 12, 2019, 6:49 a.m.