plot_sparse_pca_var: Plot variance explained by sparse PCA
In jacobheng/cellwrangler: Supplemental toolkit for single-cell RNAseq analysis
Description
Usage
Arguments
Value
Examples
View source: R/plot_sparse_pca_var.R
Description
plot_sparse_pca_var() plots the variance explained by sparse PCA (implemented by cellrangerRkit) as a
line graph.
Usage
1
plot_sparse_pca_var(sparse_pca_obj, n_pcs = NULL)
Arguments
sparse_pca_obj
a sparse pca object created by the cellRangerRkit sparse_pca() function
n_pcs
number of PCs to plot; defaults to NULL; if null, all the PCs will be plotted
Value
A ggplot object
Examples
1
plot_sparse_pca_var(sparse_pca_obj, n_pcs = 40)
jacobheng/cellwrangler documentation built on Aug. 12, 2019, 6:49 a.m.
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Description Usage Arguments Value Examples
View source: R/plot_sparse_pca_var.R
Description
plot_sparse_pca_var() plots the variance explained by sparse PCA (implemented by cellrangerRkit) as a line graph.
Usage
1 | plot_sparse_pca_var(sparse_pca_obj, n_pcs = NULL)
|
Arguments
sparse_pca_obj |
a sparse pca object created by the cellRangerRkit sparse_pca() function |
n_pcs |
number of PCs to plot; defaults to NULL; if null, all the PCs will be plotted |
Value
A ggplot object
Examples
1 | plot_sparse_pca_var(sparse_pca_obj, n_pcs = 40)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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