Files in jspaezp/sctree
Tree based analysis of single rna-seq clusters

.Rbuildignore

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DESCRIPTION

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NAMESPACE

R/antibodies.R R/cross_dataset_validation.R R/data.R R/flowstyle_plot.R R/print_tree_rules.R R/ranger_utils.R R/seurat_utils.R R/utils.R README.Rmd README.md

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man/FindAllMarkers.Rd man/FindConservedMarkers.Rd man/FindMarkers.Rd man/RangerDE.Rd man/antibodies.Rd man/as.data.frame.Seurat.Rd man/as.frequency.matrix.Rd man/as.garnett.Rd man/autoplot.Rd man/autoplot.table.Rd man/cross_validate.Rd

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man/fit_ctree.Rd man/get_aliases.Rd man/get_cluster_mapping.Rd man/get_concensus_rules.Rd man/get_genesymbols.Rd man/ggheatmap_base.Rd man/include_roxygen_example.Rd man/is.confusion.matrix.Rd man/is_gene_membrane.Rd man/plot_flowstyle.Rd man/plot_gates.Rd man/print.concensus.rules.Rd man/ranger_importances.Rd man/small_5050_mix.Rd man/small_9901_mix.Rd news.md

sctree.Rproj

tests/testthat.R tests/testthat/test-antibodies.R tests/testthat/test-cross_validation.R tests/testthat/test-examples.R tests/testthat/test-flowstyle_plot.R tests/testthat/test-ranger_importances.R tests/testthat/test-tree_rules.R tests/testthat/test-utils.R

vignettes/.gitignore

vignettes/antibody_query.Rmd vignettes/evaluating_tree_quality.Rmd

vignettes/paper/bibliography.bib

vignettes/paper/paper.md

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vignettes/plot_flowstyle.Rmd vignettes/rmdchunks/_antibodies.Rmd vignettes/rmdchunks/_finding_markers.Rmd vignettes/rmdchunks/_garnett.Rmd vignettes/rmdchunks/_installation.Rmd vignettes/rmdchunks/_news.Rmd vignettes/rmdchunks/_suggesting_strategies.Rmd vignettes/rmdchunks/_tree_plots.Rmd vignettes/rmdchunks/_usage_intro.Rmd vignettes/rmdchunks/_visualizing_markers.Rmd vignettes/sctree/sctree.Rmd

jspaezp/sctree documentation built on April 30, 2020, 10:36 p.m.

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Tree based analysis of single rna-seq clusters

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jspaezp/sctree
Tree based analysis of single rna-seq clusters

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Tree based analysis of single rna-seq clusters