Files in kevincjnixon/BinfTools

Useful functions for standard analyses

BinfTools.Rmd R/BarGene.R R/Convert_res.R R/Correlations.R R/GO.R R/GO_Tables.R R/GSEA.R R/GenerateGSEA.R R/Interactive_Plots.R R/MA_plot.R R/PathWC.R R/UpcomingFunctions.R R/Utilities.R R/barplotTopGSEA.R R/calcGaps.R R/clusFigs.R R/clusGO.R R/colPal.R R/count_plot.R R/densityPlot.R R/exploreData.R R/getLargeOLs.R R/getSym.R R/gmt.R R/loadData.R R/plotTime.R R/plotVenn.R R/ssGSEA.R R/volcanoPlot.R R/zheat.R README.md README_depreciated.md Tutorial.Rmd Vignettev1.0.Rmd doc/BinfTools.R doc/BinfTools.Rmd doc/Vignette.R doc/Vignette.Rmd doc/introduction.R doc/introduction.Rmd man/GOHeat.Rd man/GOHeat2.Rd man/GO_Dot.Rd man/GO_GEM.Rd man/GO_Table.Rd man/GO_plot.Rd man/GOgrep.Rd man/GOtab.Rd man/GSEA.Rd man/GSEA_EM.Rd man/GSEAclus.Rd man/GenerateGSEA.Rd man/MA_Plot.Rd man/PathWC.Rd man/avgExp.Rd man/barGene.Rd man/barplotTopGSEA.Rd man/calcGaps.Rd man/clusFigs.Rd man/clusGO.Rd man/clusRelev.Rd man/colPal.Rd man/combCounts.Rd man/combGO_plot.Rd man/corHeat.Rd man/count_plot.Rd man/customGMT.Rd man/customGO.Rd man/dPlot.Rd man/enPlot.Rd man/expCor.Rd man/exploreData.Rd man/filtGO.Rd man/fromEdgeR.Rd man/fromLimma.Rd man/geoMean.Rd man/getSym.Rd man/gmtHeat.Rd man/gsea_gmt.Rd man/gsva_plot.Rd man/heatClus.Rd man/heatClusRes.Rd man/interMA.Rd man/interVP.Rd man/listGO_Table.Rd man/loadData.Rd man/loadFC.Rd man/makeTermList.Rd man/mgrep.Rd man/na.rm.Rd man/normToGene.Rd man/plotClusBox.Rd man/plotCor.Rd man/plotTime.Rd man/plotVenn.Rd man/plotrnk.Rd man/pseudoMA.Rd man/quart_group.Rd man/read.gmt.Rd man/readGMT.Rd man/rmNA.Rd man/showPals.Rd man/subGSEA.Rd man/subRes.Rd man/vol3d.Rd man/volcanoPlot.Rd man/write.gmt.Rd man/writeGMT.Rd man/zheat.Rd man/zheat_v2.Rd vignettes/BinfTools.Rmd vignettes/GO/GO_analysis.Top10.pdf