kkeenan02/MsatAllele: Visualizes the scoring and binning of microsatellite fragment sizes

The package contains functions to: 1) load ah files from Strand software and build a R data base; 2) plot different graphical displays of the fragment sizes obtained for each locus and their bins; 3) interact with graphs to sort the data base for a given locus and range, allowing to easily trace back a particular group of samples to its original Strand file; bin fragment size data into population genetics files. 4) From version 1.04 on, the user can set manually bin limits and write files combining the manual and automatic methods to bin alleles.

Getting started

Package details

AuthorFilipe Alberto
MaintainerFilipe Alberto <[email protected]>
LicenseGPL (>= 2)
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
kkeenan02/MsatAllele documentation built on May 18, 2017, 8:45 p.m.