MsatAllele-package: Visualizes and scores microsatellite alleles from...

In kkeenan02/MsatAllele: Visualizes the scoring and binning of microsatellite fragment sizes

Description

The package contains functions to: 1) load ah files from Strand software and build a R data base; 2) plot different graphical displays of the fragment sizes obtained for each locus and their bins; 3) interact with graphs to sort the data base for a given locus and range, allowing to easily trace back a particular group of samples to its original Strand file; bin fragment size data into population genetics files. 5) From version 1.04 on, the user can set manually bin limits and write files combining the manual and automatic methods to bin alleles.

Details

Package:	MsatAllele
Type:	Package
Version:	1.05
Date:	2013-11-14
License:	GPL (>=2)

The package contains functions to: 1) load ah files from Strand software and build a R data base; 2) plot different graphical displays of the fragment sizes obtained for each locus and their bins; 3) sort the data base for a given locus and range, allowing to easily trace back particular samples to its original Strand file; 4) write a population genetics input file from the data base. 5) Capacity to define bins manually is a new feature since MsatAllele 1.04

Author(s)

Filipe Alberto

Maintainer: Filipe Alberto <[e-mail]>

References

Alberto F. MsatAllele_1.0: an R package to visualize the binning of microsatellite alleles Journal of Heredity. 100(3):394,397

Examples

data(DBase)
AlleleHist(DBase,"BC-4",0.01,1)
subdataBase(DBase,"BC-4",227,233)

kkeenan02/MsatAllele documentation built on May 20, 2019, 10:42 a.m.