restrict.hist: Plots an histogram of a restricted range of microsatellite...

In kkeenan02/MsatAllele: Visualizes the scoring and binning of microsatellite fragment sizes

Description

Plots an histogram of a restricted range microsatellite fragment sizes (i.e. zooming) obtained after the scoring of electrophoresis results

Usage

restrict.hist(DataBase, marker, MIN, MAX, limits=0.01, ticks=1 )

Arguments

DataBase	A data base with loci and fragment size information
marker	The locus to be plotted
MIN	The lower limit of the restricted range
MAX	The upper limit of the restricted range
ticks	The interval between two consecutive tick marks on the x axis
limits	The width of histogram classes

Details

Allows zooming up on the distribution of fragment sizes for a given locus. It is usefull to check closelly for 1bp differentiated alleles, allowing to decide wwhich MIN and MAX to use on test.table and subdataBase functions

Value

A restricted range histogram

Author(s)

Filipe Alberto

References

Alberto F. MsatAllele_1.0: an R package to visualize the binning of microsatellite alleles Journal of Heredity. 100(3):394,397

See Also

AlleleHist, subdataBase

Examples

data(DBase)
	restrict.hist(DBase,"BC-4",228,229,0.01,1)

kkeenan02/MsatAllele documentation built on May 20, 2019, 10:42 a.m.