Description Usage Arguments Details Value Author(s) References See Also Examples
Rounds a fragment size with two decimal of a bp to an integer allele code
1 | get.allele(RefDB, Marker, fragment)
|
RefDB |
A data base with loci and fragment size information |
Marker |
The locus to be plotted |
fragment |
The fragment size to round using the Data base distributions |
The algorithm implemented searchs the database for all observed fragments within the interval set by -0.8 to + 0.8 bp of the fragment. It proceeds to detect breaks in the distribution of observed distribution to find the distribution where the fragment belongs. To get the allele code the median of that distribution is rounded to an iteger value
An integer allele code
Filipe Alberto
Alberto F. MsatAllele_1.0: an R package to visualize the binning of microsatellite alleles Journal of Heredity. 100(3):394,397
1 2 3 | data(DBase)
get.allele(DBase,"BC-16",142.54)
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