AlleleHist: Plots an histogram of microsatellite fragment sizes

In kkeenan02/MsatAllele: Visualizes the scoring and binning of microsatellite fragment sizes

Description

Plots an histogram of microsatellite fragment sizes obtained after the scoring of electrophoresis results

Usage

AlleleHist(DataBase, marker, limits=0.01, ticks=1)

Arguments

DataBase	A data base with loci and fragment size information
marker	The locus to be plotted
limits	The width of histogram classes
ticks	The interval between two consecutive tick marks on the x axis

Details

The generated plot is usefull to analyze the total variation of fragment sizes obtained for a given locus. It will allow the detection of range were 1bp mutation may have occurred

Value

An histogram with the frequency of the fragment sizes scored for a given locus in the data Base

Author(s)

Filipe Alberto

References

Alberto F. MsatAllele_1.0: an R package to visualize the binning of microsatellite alleles Journal of Heredity. 100(3):394,397

See Also

read.ah.file, restrict.hist

Examples

data(DBase)
AlleleHist(DBase,"BC-4",0.01,1)

kkeenan02/MsatAllele documentation built on May 20, 2019, 10:42 a.m.