Man pages for kkeenan02/MsatAllele
Visualizes the scoring and binning of microsatellite fragment sizes

allCumPlots a cumulative allele size distribution
AlleleCumPlots a cumulative allele size distribution
AlleleHistPlots an histogram of microsatellite fragment sizes
bin.limitsWrites the limits of bin classes and rounded bin codes
BinStatSummary bin statistics
BinStatsSummary bin statistics
DBaseA data base of the type used by this package
DBZnA data base of the type used by this package with Zostera...
DefBinLimLets the used define bin limits
fastReadFragReads tab delimited text files with input fragment sizes...
getAllinternal c++ function
get.alleleGets the allele code from an electrophoresis fragment size
getAlleleGets the allele code from an electrophoresis fragment size
getLowFreqThis function allows users to lookup the allele database for...
getpointsInteracts with AlleleCum graph to list observations
InputFileA data matrix similar to the tab delimited text file such as...
mark.binsAdds bin limits to histograms of fragment size distribution
MsatAllele-packageVisualizes and scores microsatellite alleles from...
OrderByLocusA function to order the fragment size vector for a given...
read.ah.fileReads .ah files from Strand and creates a R data base
read.frag.sizesReads tab delimited text files with input fragment sizes...
restrict.histPlots an histogram of a restricted range of microsatellite...
STRandOUTA table like the one exported in the Strand .ah file
subdataBaseSorts the data base for a given locus and a restricted range
transDBCreates a data base object in the form used by other...
write.dataWrite multilocus genotype tables allowing to specify the use...
write.PG.file.allWrites a file with the bin codes with one column per allele
write.PG.file.locWrites a file with the bin codes with one column per locus
kkeenan02/MsatAllele documentation built on May 18, 2017, 8:45 p.m.