read.ah.file: Reads .ah files from Strand and creates a R data base

In kkeenan02/MsatAllele: Visualizes the scoring and binning of microsatellite fragment sizes

Description

Reads .ah files from Strand and creates a R data base object with scored microsatellite fragment sizes

Usage

read.ah.file(ahfile, date, plate)

Arguments

ahfile	A export .ah file from Strand
date	A relevant date to be written on the data base
plate	A sample plate code to be written on the data base

Details

The Strand softare exports scored fragment sizes in a .ah file. This function will read those files and create the R data base that will be used by this package

Value

Marker	Genetic marker code
Sample	Sample code
Read	Fragment size
Date	Date
Plate	Strand plate file

Author(s)

Filipe Alberto

References

Alberto F. MsatAllele_1.0: an R package to visualize the binning of microsatellite alleles Journal of Heredity. 100(3):394,397

See Also

AlleleHist, restrict.hist, subdataBase

Examples

data(STRandOUT)
write.table(STRandOUT,"ah file simulated.txt",sep="\t",na="",quote=FALSE,col.names=FALSE,
            row.names=FALSE)
read.ah.file("ah file simulated.txt","25-2-2008","P1MX4MX5")

kkeenan02/MsatAllele documentation built on May 20, 2019, 10:42 a.m.