InputFile: A data matrix similar to the tab delimited text file such as...

In kkeenan02/MsatAllele: Visualizes the scoring and binning of microsatellite fragment sizes

Description

A data table with the following fields: 1st column-sample name; 2nd column-Panel or test name (specific combination of loci in that sample); 3rd column-Locus name; 4th column-fragment size for first allele; 5th column-fragment size for 2nd allele.

Usage

data(InputFile)

Format

A data frame with 480 observations on the following 5 variables.

Sample.Name

Sample names

Panel

The panel or test (a group of loci used to genotype the sample

Marker

The loci's vector

Size.1

Fragment size for the first allele scored

Size.2

Fragment size for the second allele scored, homozygotes have the same value has the preceding item

Details

This table format can be easily generated from output files from peak calling software

Author(s)

Filipe Alberto

References

Alberto F. MsatAllele_1.0: an R package to visualize the binning of microsatellite alleles Journal of Heredity. 100(3):394,397

Examples

data(InputFile)

kkeenan02/MsatAllele documentation built on May 20, 2019, 10:42 a.m.