allCum: Plots a cumulative allele size distribution

In kkeenan02/MsatAllele: Visualizes the scoring and binning of microsatellite fragment sizes

Description

This function plots a cumulative allele size distribution with number of observations on the x axis and allele size on the y axis. Each alternative allele bin is colored differently

Usage

allCum(DataBase, loci, ymin = NULL, ymax = NULL, c1 = "pink", 
       c2 = "blue", ytsize = 1, psize = 1,pch=1, limit = 0.8)

Arguments

DataBase	A data base with loci and fragment size information
loci	The locus to be plotted
ymin	The minimum value in the allele size scale to plot
ymax	The maximum value in the allele size scale to plot
c1	color for the first allele and every other following ones
c2	color for the second allele and every other following ones
ytsize	Text size for the y axis in proportion of the default value of one
psize	Point size fin proportion of the default value of one
pch	Type of plotting symbol
limit	Bin limits

Value

The function plots a cumulative allele size distribution for a given locus. The y scale can be restricted to a given interval of allele size. This plot is similar to the plots implemented in Flexibin and Allelogram programs

Author(s)

Filipe Alberto

References

Alberto F. MsatAllele_1.0: an R package to visualize the binning of microsatellite alleles Journal of Heredity. 100(3):394,397

See Also

AlleleHist, restrict.hist

Examples

data(DBase)
allCum(DBase,"BC-4", limit = 0.8)

kkeenan02/MsatAllele documentation built on May 20, 2019, 10:42 a.m.