subdataBase: Sorts the data base for a given locus and a restricted range

In kkeenan02/MsatAllele: Visualizes the scoring and binning of microsatellite fragment sizes

Description

This function can be used to see the information for the fragments observed in a given the range of a particular loci. It is usefull to trace back samples with strange sizes to their original Strand files

Usage

subdataBase(DataBase, marker, MIN=min(DataBase[,3]), MAX=max(DataBase[,3]))

Arguments

DataBase	A data base with loci and fragment size information
marker	The locus to be sorted
MIN	The lower limit of the restricted range
MAX	The upper limit of the restricted range

Details

Returns a list of observations from the data base for a given locus and range defined by the MIN and MAX allele sizes arguments, with default values equal to the minimum and maximum observations recorded in the data base

Value

~Describe the value returned If it is a LIST, use

DFrow	The row.name information for that fragment in the data base
Sample	The Sample code
Reading	The fragment size
Gel	The Strand file for that fragment

Author(s)

Filipe Alberto

References

Alberto F. MsatAllele_1.0: an R package to visualize the binning of microsatellite alleles Journal of Heredity. 100(3):394,397

See Also

AlleleHist, AlleleCum

Examples

data(DBase)
	subdataBase(DBase,"BC-4",228,232)

kkeenan02/MsatAllele documentation built on May 20, 2019, 10:42 a.m.