Description Usage Arguments Details Value Author(s) References See Also Examples
Reads input text files with continuous fragment size data and creates an R data base.
1 | fastReadFrag(in.file, date, plate, long = FALSE, keep.missing = FALSE)
|
in.file |
The name of the input file |
date |
A relevant date to be written on the data base |
plate |
A sample plate code to be written on the data base |
long |
Determines whether homozygotes should be stored as a single row or two. |
keep.missing |
retain missing data rows in the output dataframe |
This functions reads tab delimited files with the following fields: 1st column-sample name; 2nd column-Panel or test name (specific combination of loci in that sample); 3rd column-Locus name; 4th column-fragment size for first allele; 5th column-fragment size for 2nd allele. Use NA to code absent data.
Marker |
Genetic marker code |
Sample |
Sample code |
Read |
Fragment size |
Date |
Date |
Plate |
Plate code |
Kevin Keenan
Alberto F. MsatAllele_1.0: an R package to visualize the binning of microsatellite alleles Journal of Heredity. 100(3):394,397
read.ah.file
, AlleleCum
, subdataBase
1 2 3 | data(InputFile)
write.table(InputFile,"Input file.txt",sep="\t",na="",quote=FALSE,col.names=FALSE,row.names=FALSE)
read.frag.sizes("Input file.txt","25-2-2008","M1MpMetapop")
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.