Man pages for kkeenan02/MsatAllele
Visualizes the scoring and binning of microsatellite fragment sizes
| allCum | Plots a cumulative allele size distribution |
| AlleleCum | Plots a cumulative allele size distribution |
| AlleleHist | Plots an histogram of microsatellite fragment sizes |
| bin.limits | Writes the limits of bin classes and rounded bin codes |
| BinStat | Summary bin statistics |
| BinStats | Summary bin statistics |
| DBase | A data base of the type used by this package |
| DBZn | A data base of the type used by this package with Zostera... |
| DefBinLim | Lets the used define bin limits |
| fastReadFrag | Reads tab delimited text files with input fragment sizes... |
| getAll | internal c++ function |
| get.allele | Gets the allele code from an electrophoresis fragment size |
| getAllele | Gets the allele code from an electrophoresis fragment size |
| getLowFreq | This function allows users to lookup the allele database for... |
| getpoints | Interacts with AlleleCum graph to list observations |
| InputFile | A data matrix similar to the tab delimited text file such as... |
| mark.bins | Adds bin limits to histograms of fragment size distribution |
| MsatAllele-package | Visualizes and scores microsatellite alleles from... |
| OrderByLocus | A function to order the fragment size vector for a given... |
| read.ah.file | Reads .ah files from Strand and creates a R data base |
| read.frag.sizes | Reads tab delimited text files with input fragment sizes... |
| restrict.hist | Plots an histogram of a restricted range of microsatellite... |
| STRandOUT | A table like the one exported in the Strand .ah file |
| subdataBase | Sorts the data base for a given locus and a restricted range |
| transDB | Creates a data base object in the form used by other... |
| write.data | Write multilocus genotype tables allowing to specify the use... |
| write.PG.file.all | Writes a file with the bin codes with one column per allele |
| write.PG.file.loc | Writes a file with the bin codes with one column per locus |
