Files in kwathen/OCTOPUS
OCTOPUS

.Rbuildignore

.gitignore

.travis.yml

DESCRIPTION

DownloadImg.jpg

ExampleS3Class.R

HelpfulLinks.txt

Index.Rmd LICENSE.md

LibraryProgrammingGuidelines.txt

MiscFiles/OCTOPUSLogoOptions.jpg

MiscFiles/OCTOPUS_1.3.0.3.tar.gz

MiscFiles/OctopusPic.png

MiscFiles/PlatformTrialSimulator_1.2.1.2.tar.gz

MiscFiles/PlatformTrialSimulator_1.3.0.1.tar.gz

MiscFiles/PlatformTrialSimulator_1.3.0.2.tar.gz

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NAMESPACE

NEWS.md

OCTOPUS.Rproj

OCTOPUS.png

R/AccrualMethods.R R/AddControlData.ProcessReptMeas.R R/AddControlData.ProcessReptMeasChngBaseline.R R/AddControlData.ProcessSingleTimeOutcome.R R/AddControlData.R R/BuildResultsDataSet.R R/BuildSimulationResultsDataSet.R R/CheckISAEnrollmentStatus.R R/CheckNextTrialAnalysisTime.R R/CheckTrialMonitor.R R/CodeTemplateFile.R R/ComputePosteriorProbs.R R/CopyControlCovariates.R R/CopyCovariates.R R/CreateDataSetForAnalysis.R R/CreateProject.R R/EstimateNumberOfPatientsToSimulate.R R/Functions.R R/GetBayesianCutoffs.R R/GetCILimits.R R/GetFinalISAAnalysisTime.R R/GridFunctions.R R/InitializeISARandomizer.R R/InitializePatientList.R R/InitializeTrialRandomizer.R R/MakeDecision.R R/MakeDecisionBasedOnCI.R R/MakeDecisionBasedOnPostProb.R R/MakeDecisionDoses.R R/MakeTrialDecision.R R/OCTOPUS.R R/ProcessData.R R/Randomize.R R/RandomizeBetweenISA.R R/RandomizeWithinISA.R R/RecruitmentComparitor.R R/RunAnalysis.AOV.R R/RunAnalysis.AOVPerDose.R R/RunAnalysis.BayesianNormal.R R/RunAnalysis.Functions.R R/RunAnalysis.MCPModAnalysis.R R/RunAnalysis.R R/RunAnalysis.Ranked.R R/RunAnalysis.RankedExact.R R/RunAnalysis.RankedPerDose.R R/RunAnalysis.RankedPerDoseExact.R R/RunAnalysis.ReptMeasAnalysis.R R/RunAnalysis.ReptMeasAnalysisPerDose.R R/RunAnalysis.TTest.R R/RunAnalysis.TTestPerDose.R R/RunExample.R R/RunFinalTrialAnalysis.IncludeAllControl.R R/RunFinalTrialAnalysis.R R/RunISAAnalysis.R R/RunRealTrialAnalysis.R R/RunSimulation.R R/RunTrialAnalysis.IncludeAllControl.R R/RunTrialAnalysis.IndependentISA.R R/RunTrialAnalysis.R R/SimPatientOutcomes.Correlated.R R/SimPatientOutcomes.Independent.R R/SimPatientOutcomes.MVN.R R/SimPatientOutcomes.MVNByGroup.R R/SimPatientOutcomes.MVNWithCovariates.R R/SimPatientOutcomes.R R/SimulateAllPatientCovariates.R R/SimulateAllPatientOutcomes.R R/SimulateISAStartTime.R R/SimulatePatientCovariates.Categorical.R R/SimulatePatientCovariates.R R/SimulateScenario.R R/SimulateSingleTrial.R R/SubsetData.R R/UpdateRandomizer.R README.md VersionLog.R

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enrollment/enroll-1.csv

inst/BayesianModelFiles/NormalModel.txt

inst/Examples/CaseStudy2/BayesianNormalAR1.txt

inst/Examples/CaseStudy2/BuildMe.R

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inst/Examples/CaseStudy2/Description.txt

inst/Examples/CaseStudy2/PostProcess.R inst/Examples/CaseStudy2/RunAnalysis.BayesianNormalAR1.R inst/Examples/CaseStudy2/SimulationDesign.R inst/Examples/CaseStudy2/TrialDesign.R inst/Examples/CaseStudy2/TrialDesignFunctions.R

inst/Examples/CaseStudy2/cleanup.sh

inst/Examples/CaseStudy2/combine.sh

inst/Examples/CaseStudy2/sims.RData

inst/Examples/CaseStudy2/startGridSims.zsh

inst/Examples/CaseStudy3/AnalysisModelBayesianAR1.R

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tests/testthat.R tests/testthat/CovariateHelperFunctions/RunAnalysis.TestWithCovariates.R tests/testthat/CovariateHelperFunctions/SimulationDesign.R tests/testthat/CovariateHelperFunctions/TrialDesign.R tests/testthat/CovariateHelperFunctions/TrialDesignFunctions.R

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