CalcSNNSparse: Function to convert the knn graph into the snn graph. Stored...
In ludvigla/spaceST: spaceST

Function to convert the knn graph into the snn graph. Stored in a sparse representation.

1 2	CalcSNNSparse(cell.names, k.param, nn.large, nn.ranked, prune.SNN, print.output)

`cell.names`	A vector of cell names which will correspond to the row/ column names of the SNN
`k.param`	Defines nearest neighborhood when computing NN graph
`nn.large`	Full KNN graph (computed with get.knn with k set to k.param * k.scale)
`nn.ranked`	Subset of full KNN graph that only contains the first k.param nearest neighbors. Used to define Jaccard distances between any two cells
`prune.SNN`	Sets the cutoff for acceptable Jaccard distances when computing the neighborhood overlap for the SNN construction. Any edges with values less than or equal to this will be set to 0 and removed from the SNN graph. Essentially sets the strigency of pruning (0 — no pruning, 1 — prune everything).
`print.output`	Whether or not to print output to the console