SpatialNetwork: spaceST network graphs

In ludvigla/spaceST: spaceST

Description

Visualize SNN networks for spatial data

Usage

SpatialNetwork(object, subset_by = NULL, color_by = "clusters",
  select.clust.group = 1, select.rep.group = NULL,
  mode = "fruchtermanreingold", vertex.size = 1,
  edge.color = "black", edge.size = 0.1, clusters.snn = F,
  cols = NULL, ...)

Arguments

object	Object of class spaceST.
subset_by	Select attribute to subset igraph by, default NULL (options: "clusters", "replicate").
color_by	Select attribute to color vertices by (options: "clusters", "replicate", "clust_and_rep).
select.clust.group	Select cluster by cluster number.
select.rep.group	Select replicate by replicate ID.
mode	Select mode for network object, default NULL (options: "spatial", "circle", "kamadakawai", ... For more options, see available placement algorithms in the sna package).
vertex.size	Size of nodes/vertices.
edge.color	Color edges of network.
edge.size	Select size for edges in network.
clusters.snn	Cluster data using network based approach.
cols	character; Specify colors of grouping variables.
...	Parameters passed to ggnet2

ludvigla/spaceST documentation built on May 29, 2019, 3:43 a.m.