volcano_plot_spaceST: Volcano plot
In ludvigla/spaceST: spaceST
Description
create a volcano plot of differentiually expressed genes
Usage
1
2
volcano_plot_spaceST(object, cluster, FDR.cutoff = 0.05,
logFC.cutoff = 1, annotate.top.genes = NULL, widget.out = NULL)
Arguments
object
An object of class spaceST with differentially expressed genes.
cluster
Select cluster to compare woith background.
FDR.cutoff
Set cutoff threshold for adjusted p-values.
logFC.cutoff
Set log2-foldchange cutoff.
annotate.top.genes
Specify whether the top genes should be annotated in the plot.
widget.out
Save html widget to file path.
ludvigla/spaceST documentation built on May 29, 2019, 3:43 a.m.
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Description
create a volcano plot of differentiually expressed genes
Usage
1 2 | volcano_plot_spaceST(object, cluster, FDR.cutoff = 0.05,
logFC.cutoff = 1, annotate.top.genes = NULL, widget.out = NULL)
|
Arguments
object |
An object of class spaceST with differentially expressed genes. |
cluster |
Select cluster to compare woith background. |
FDR.cutoff |
Set cutoff threshold for adjusted p-values. |
logFC.cutoff |
Set log2-foldchange cutoff. |
annotate.top.genes |
Specify whether the top genes should be annotated in the plot. |
widget.out |
Save html widget to file path. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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