volcano_plot_spaceST: Volcano plot

Description Usage Arguments

View source: R/DE_analysis.R

Description

create a volcano plot of differentiually expressed genes

Usage

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volcano_plot_spaceST(object, cluster, FDR.cutoff = 0.05,
  logFC.cutoff = 1, annotate.top.genes = NULL, widget.out = NULL)

Arguments

object

An object of class spaceST with differentially expressed genes.

cluster

Select cluster to compare woith background.

FDR.cutoff

Set cutoff threshold for adjusted p-values.

logFC.cutoff

Set log2-foldchange cutoff.

annotate.top.genes

Specify whether the top genes should be annotated in the plot.

widget.out

Save html widget to file path.


ludvigla/spaceST documentation built on May 29, 2019, 3:43 a.m.