var_genes: Detect variable genes using trendsceek package

Description Usage Arguments

View source: R/DE_analysis.R

Description

Find most variable genes using calc_varstats function from trendsceek.

Usage

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var_genes(x, quantile.cutoff = 0.9, method = "glm",
  min.ncells.expr = 3, min.expr = 5)

Arguments

x

spaceST object

quantile.cutoff

set cutoff level

method

method used for linear regression

min.ncells.expr

An integer specifying the minimum number of cells a gene needs to be expressed in with an expression level above 'min.expr'.

min.expr

A numeric specifying the minimum expression required in a cell.


ludvigla/spaceST documentation built on May 29, 2019, 3:43 a.m.