smooth.viz: Smooth visualization of gene expression patterns

In ludvigla/spaceST: spaceST

Description

Smooth visualization of gene expression patterns

Usage

smooth.viz(object, value, type = "norm.data", HE.list = NULL,
  overlay.spots = FALSE, set.max.alpha = 0.7, palette = "spectral",
  ...)

Arguments

object	Object of class spaceST.
value	Target vector to visualize. This value can be chosen from any slot of the spaceST object containing data linked to array spots.
type	Select dataset where the value can be found [options: "expr", "norm.data", "pca", "topics]
HE.list	List of paths to HE images in jpeg format that should be used as a background for the spatial heatmap.
overlay.spots	Set to TRUE if you want to overlay array spots on the smoothed heatmap.
set.max.alpha	Sets maximum alpha value.
palette	character; SPecify color palette palette.select.
...	Parameters passed to geom_point() in the array spot layer.

ludvigla/spaceST documentation built on May 29, 2019, 3:43 a.m.