filter: Method filter for spaceST class.

In ludvigla/spaceST: spaceST

Description

Apply filter to spaceST data.

Usage

filter(object, unique.genes = 300, min.exp = 2, min.features = 15,
  filter.genes = NULL, force.filter = FALSE, delimiter = "_")

Arguments

object	Object of class spaceST.
unique.genes	The lowest number of unique genes allowed in a feature (spot).
min.exp	Integer value specifying the lowest expression value allowed at least min.features number of features.
min.features	Integer value specifying the lowest number of features with at least min.exp.
filter.genes	A character vector specifying genes that should be filtered from the expression data.
force.filter	Force filter on a spaceST object.
delimiter	Character used to delimit coordinates in headers.

ludvigla/spaceST documentation built on May 29, 2019, 3:43 a.m.