RunDEspaceST: Run DE analysis using the edgeR package to detect...
In ludvigla/spaceST: spaceST
Description
Usage
Arguments
Value
Description
Run DE analysis for each cluster of spots vs remaining spots
Usage
1
RunDEspaceST(spST, clusters = "topic", verbose = TRUE, pvalue = 0.05)
Arguments
spST
spaceST object
clusters
Integer vector of cluster IDs or character specifying existing cluster vector ("topic", "SNN")
verbose
Print messages
pvalue
pvalue cutoff
Value
Topic matrix
ludvigla/spaceST documentation built on May 29, 2019, 3:43 a.m.
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Description Usage Arguments Value
Description
Run DE analysis for each cluster of spots vs remaining spots
Usage
1 | RunDEspaceST(spST, clusters = "topic", verbose = TRUE, pvalue = 0.05)
|
Arguments
spST |
spaceST object |
clusters |
Integer vector of cluster IDs or character specifying existing cluster vector ("topic", "SNN") |
verbose |
Print messages |
pvalue |
pvalue cutoff |
Value
Topic matrix
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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