DE_heatmap: Plot DE heatmap

In ludvigla/spaceST: spaceST

Description

Function used to plot heatmaps of DE genes expression

Usage

DE_heatmap(object, FDR.cutoff = 0.05, logFC.cutoff = 2, log.2 = T,
  type = "normalized", include.downregulated = F, scale.data = T)

Arguments

object	Object of class spaceST with DE results.
FDR.cutoff	Cutoff for adjusted p-values.
logFC.cutoff	Cutoff for logFC.
log.2	Log2 transform data.
type	Select data type from spaceST object.
include.downregulated	Include downregulated genes when selecting gene to visualize in heatmap. Absolute value will be used for the logFC threshold.
scale.data	Logical speficying whether or not values should be scaled.

Value

Heatmap of DE genes.

ludvigla/spaceST documentation built on May 29, 2019, 3:43 a.m.