API for ludvigla/spaceST
spaceST

Global functions
BuildTopicSNN Man page Source code
CalcSNNSparse Man page Source code
CreatespaceSTobject Man page Source code
CreatexCellBoot Man page Source code
NormalizespaceST Man page
NormalizespaceST,spaceST-method Man page
RunModularityClusteringspaceST Man page Source code
RunTSNEspaceST Man page Source code
ST_statistics Man page Source code
ST_statistics.plot Man page Source code
SetIfNull Man page Source code
SpatialNetwork Man page Source code
addalpha Man page Source code
align.grids Man page Source code
batch.correct Man page
batch.correct,spaceST-method Man page
bias.bootstraps,xCellBoot-method Man page
calc_cpm Man page Source code
cast2list Man page Source code
celltype.bootstraps,xCellBoot-method Man page
clust2feature Man page Source code
cluster.bootstraps,xCellBoot-method Man page
collect_gene_data Source code
ensembl2hgnc Man page Source code
ensembl2hgnc.data.frame Man page
ensembl2hgnc.default Source code
ensembl2hgnc.list Man page Source code
ensembl2hgnc.matrix Man page
ensembl2hgnc.spaceST Source code
format_3D_data Man page Source code
get_coordinates Man page Source code
get_coordinates.data.frame Man page Source code
get_coordinates.list Man page Source code
get_coordinates.matrix Man page Source code
get_coordinates.spaceST Man page Source code
interpolate_2D_data Man page Source code
js3Dscatter Man page Source code
manipulate.grid Man page Source code
mean.bootstraps,xCellBoot-method Man page
merge_exp_list Man page Source code
morph.3d Man page Source code
obs.bootstraps,xCellBoot-method Man page
pca.spaceST Man page
pca.spaceST,spaceST-method Man page
pca_plot Man page
plot.QC.spaceST Man page
plot.QC.spaceST,spaceST-method Man page
rasterize_scatter Man page Source code
rasterize_scatter.default Source code
rasterize_scatter.list Source code
rename_list Man page
scale2range Man page Source code
scatter_HE Man page Source code
scatter_HE.default Source code
scatter_HE.list Source code
show Man page
spaceST Man page
spaceST-class Man page
spaceST-show Man page
spatial.clusters Man page Source code
spatial.heatmap Man page Source code
subset.xCell Man page Source code
topic_cluster_QC_plot Man page Source code
topic_cluster_matrix Man page Source code
topic_clusters Man page Source code
topic_compute Man page Source code
topic_compute.default Source code
topic_compute.spaceST Source code
topic_heatmap Man page Source code
violin.bootstraps Man page Source code
xCell.bootstrap Man page Source code
xCell.heatmap Man page Source code
xCellBoot Man page
xCellBoot-class Man page
ludvigla/spaceST documentation built on April 20, 2018, 4:17 p.m.