Files in ludvigla/spaceST
spaceST
.gitignore
DESCRIPTION
NAMESPACE
R/.DS_Store
R/DE_analysis.R
R/RP.R
R/SNN.R
R/SpatialNetwork.R
R/preprocessing.R
R/spaceST.R
R/spaceST_methods.R
R/spatial_tools.R
R/tesselation.R
R/topic_functions.R
R/tsne.R
R/utility_functions.R
data/MOB.RData
inst/extdata/HE_Rep1.jpg
inst/extdata/HE_Rep2.jpg
man/BuildTopicSNN.Rd
man/CalcSNNSparse.Rd
man/CreatespaceSTobject.Rd
man/DE_heatmap.Rd
man/ExtractTopFeaturesST.Rd
man/LDA.Rd
man/RunDEspaceST.Rd
man/RunModularityClusteringspaceST.Rd
man/RunTSNEspaceST.Rd
man/ST_statistics.Rd
man/ST_statistics_plot.Rd
man/SetIfNull.Rd
man/SpatialNetwork.Rd
man/batch.correct.Rd
man/calc_cp10k.Rd
man/clusterST.Rd
man/cluster_matrix.Rd
man/collect_gene_data.Rd
man/convert.Rd
man/coordinates.Rd
man/counts.Rd
man/filter.Rd
man/getLDA.Rd
man/heatmaps.Rd
man/merge.Rd
man/normcounts.Rd
man/palette.select.Rd
man/plot_QC_spaceST.Rd
man/smooth.viz.Rd
man/spPCA.Rd
man/spaceST-methods.Rd
man/spaceST-package.Rd
man/spaceST.Rd
man/spaseST-methods.Rd
man/spatial.clusters.Rd
man/spots_under_tissue.Rd
man/tessViz.Rd
man/tesselation.plot.Rd
man/tiles2polygon.Rd
man/topic.clusters.Rd
man/topic_heatmap.Rd
man/var_genes.Rd
man/volcano_plot_spaceST.Rd
spST
spaceST.Rproj
vignettes/spacest.R
vignettes/spacest.Rmd
vignettes/spacest.html
