macintyrelab/CNpare: Comparing tumour copy number profiles

CNpare is designed to compare and contrast genome-wide tumour copy number profiles. This package can be used to: 1) calculate similarities between copy-number profiles, 2) quantify the extent of genome differences between copy-number profiles, and 3) compare profiles based on copy-number signatures. The most basic initial input to the CNpare package consists of a data frame containing the segmented copy number profile from a tumor sample, which can be compared to the cells_segcn.RData included in this package in order to find the most representative model system.

install.packages("remotes")
remotes::install_github("macintyrelab/CNpare")