annotate_supercells_to_cluster: Computes annotation of super-cell types based on the...

In mariiabilous/SuperCellBM:

Description

Runs supercell_assign and supercell_purity for all super-cell elements in SC.list (output of compute_supercells)

Usage

annotate_supercells_to_cluster(
  SC.list,
  sc.annotation,
  annotation.name,
  annotation.meth = "jaccard",
  verbose = FALSE
)

Arguments

SC.list	list of super-cell-like structures (output of compute_supercells)
sc.annotation	vector of cell type / cluster / etc annotation at the single-cell level (length on the vector == number of single cells)
annotation.name	a name of the annotation, will be added as additional SC.list field
annotation.meth	method parameter of supercell_assign function. Default is 'jaccard'
verbose	flag whether to pring progress steps

Value

SC.list with each super-cell element containing additional field annotation.name that contains super-cell annotation

mariiabilous/SuperCellBM documentation built on Jan. 28, 2022, 7:45 p.m.