mc_build_mc: Builds metacell partition using output of 'mc_build_cgraph'

In mariiabilous/SuperCellBM:

Description

Builds metacell partition using output of mc_build_cgraph

Usage

mc_build_mc(
  X,
  min_mc_size = 15,
  p_resamp = 0.75,
  n_resamp = 500,
  mc.K = 30,
  mc.alpha = 2
)

Arguments

X	– an output of mc_build_cgraph
min_mc_size	– min_mc_size input parameter of mcell_coclust_from_graph_resamp and mcell_mc_from_coclust_balanced from metacell
p_resamp	– mcell_coclust_from_graph_resamp input parameter of mcell_coclust_from_graph_resamp from metacell
n_resamp	– n_resamp input param of mcell_coclust_from_graph_resamp from metacell @param mc.K – mc.K input parameter of mcell_mc_from_coclust_balanced from metacell @param mc.alpha – mc.alpha input parameter of mcell_mc_from_coclust_balanced from metacell @return coclust – coclust oject of metacell @return coclust_name – name of coclust @return mc – mc oject of metacell @return min_mc_size – min_mc_size input parameter @return p_resamp – p_resamp input parameter @return n_resamp – n_resamp input parameter @return mc.K – mc.K input parameter

mariiabilous/SuperCellBM documentation built on Jan. 28, 2022, 7:45 p.m.