compute_consistency_of_supercell_optimal_clustering: Compute consistency of super-cell (meta-cell) clustering...

In mariiabilous/SuperCellBM:

Description

Compute consistency of super-cell (meta-cell) clustering corresponding to optimal number of clusters with the GT annotation (or single-cell clustering, if GT annotation is not available)

Usage

compute_consistency_of_supercell_optimal_clustering(
  SC.list,
  sc.annotation,
  sc.clustering = NULL,
  clustering.name = "hclust",
  sc.alternative.clustering = NULL,
  max.N.cl = NULL
)

Arguments

SC.list	list of super-cells and other simplifications (output of compute_supercell)
sc.clustering	clustering of single-cell data, if not provided (is NULL), will be set to GT_annotation
sc.alternative.clustering	output of compute_alternative_clustering or NULL
GT_annotation	ground truth clustering of single-cells
clustering_name	names of clustering (default is 'hclust')

mariiabilous/SuperCellBM documentation built on Jan. 28, 2022, 7:45 p.m.