build_MC: Build metacell oblect Wrapper that inits and builds metacell...

In mariiabilous/SuperCellBM:

Description

Build metacell oblect Wrapper that inits and builds metacell object from count matrix

Usage

build_MC(
  sc.counts,
  proj.name,
  genes.to.use = NULL,
  mc.k.knn = 100,
  MC.T_vm = 0.08,
  MC.folder = "MC",
  min_mc_size = 20,
  p_resamp = 0.75,
  n_resamp = 500,
  mc.alpha = 2,
  mc.K = 30,
  verbose = FALSE
)

Arguments

sc.counts	single-cell count matrix (genes x cells)
proj.name	project_name parameter in
genes.to.use	genes to use ti build metacell
mc.k.knn	k in kNN single-cell network in metacell
MC.T_vm	cutoff to select HVG in metacell
MC.folder	folder to store metacell files
min_mc_size	minimum size of metacell (used to vary graining level)
p_resamp

Value

metacell::scdb_mc - like output with some additional information stored as a list

mariiabilous/SuperCellBM documentation built on Jan. 28, 2022, 7:45 p.m.