compute_supercells_silhouette: Computes silhouete distance for a list of clustring results

In mariiabilous/SuperCellBM:

Description

Computes silhouete distance for a list of clustring results

Usage

compute_supercells_silhouette(
  SC.list,
  N.comp,
  pca_name = "SC_PCA",
  clustering_name = "hclust",
  verbose = FALSE
)

Arguments

SC.list	super-cell-like structures
N.comp	number of principal components to use for distance calculation
pca_name	name (key) to PCA results
clustering_name	name (key) to clustering results. Clustering result are expected to be stores as a list with list names being number of custers and value being clustering partition

Value

SC.list with a silhouette field paste0("silh:", clustering_name)

mariiabilous/SuperCellBM documentation built on Jan. 28, 2022, 7:45 p.m.