compute_supercells_PCA: Computes PCA for supee-cells over all simplification methods,...

In mariiabilous/SuperCellBM:

Description

Computes PCA for supee-cells over all simplification methods, graining levels (gammas) and random seeds

Usage

compute_supercells_PCA(
  SC.list,
  SC.GE.list,
  N.comp,
  genes.omit = NULL,
  pca_name = "SC_PCA",
  verbose = FALSE
)

Arguments

SC.list	super-cell list
SC.GE.list	super-cell gene expression list
N.comp	numbe of PC to compute
genes.omit	list of genes to exclude from hvg
pca_name	name of the fiels to add to SC.list

Value

SC.list with an additional fiels named pca_name containing PCA embedding

mariiabilous/SuperCellBM documentation built on Jan. 28, 2022, 7:45 p.m.