compute_supercells_clustering: Computes clustering for super-cells

In mariiabilous/SuperCellBM:

Description

Computes clustering for super-cells

Usage

compute_supercells_clustering(
  SC.list,
  N.comp = 10,
  N.clusters.seq = c(2:10),
  pca_name = "SC_PCA",
  DO_silhouette = TRUE
)

Arguments

SC.list	list of super-cells and other simplifications (output of compute_supercell)
N.comp	number or a vector of principal components to compute clastering on
N.clusters.seq	vector of number of clusters to compute
pca_name	name of the PCA field, default is 'SC_PCA' as returned with compute_supercells_PCA

Value

SC.list with additional fields: hclust with hierarchical clustering results and silh:hclust with silhouette coefficients

mariiabilous/SuperCellBM documentation built on Jan. 28, 2022, 7:45 p.m.