compute_supercells_GE: Computes gene expression of metacells

In mariiabilous/SuperCellBM:

Description

Computes gene expression of metacells

Usage

compute_supercells_GE(
  sc.GE,
  SC.list,
  ToComputeSC_GE = TRUE,
  filename = "additional_gammas",
  data.folder = "./data",
  folder.suf = "",
  verbose = FALSE
)

Arguments

sc.GE	single-cell gene expression
SC.list	list of super-cells (an output of compute_supercells or compute_supercells_metacells)
ToComputeSC_GE	whether to compute or to load already computed GE
filename	file name where to save or load GE
data.folder	path to the data folder, usually has a fprmat './data/project_name'

Value

a list of GE in the same format as "SC.list", i.e., "SC.GE.list[[MS_method]][[gamma_i]][[seed_i]]"

mariiabilous/SuperCellBM documentation built on Jan. 28, 2022, 7:45 p.m.