GO_match_top_cor_genes: computes jaccard index of GO annotation of a pair of genes,...
In mariiabilous/SuperCellBM:

computes jaccard index of GO annotation of a pair of genes, used for an assessment of gene similarity (my approach)

GO_match_top_cor_genes(
  g.g.rank,
  bm,
  go_domain = c("biological_process", "molecular_function", "cellular_component")
)

`g.g.rank`	output of rank_gene_gene_cor or add_cor_pval
`go_domain`	atr which GO domain (out of 'biological_process','molecular_function','cellular_component') to use, default all
`martDS`	`dataset` parameter of `useMart` funcrion of package "biomaRt"

g.g.rank data frame with additional fields jaccard and shared, where: - jaccard jaccard index of GO annotation of a pair of genes - shared absolute number of shared GO ids between a pair of genes

mariiabilous/SuperCellBM documentation built on Jan. 28, 2022, 7:45 p.m.