Bagged.RDA: Description: BAGGED RDA Bootstrap solutions that follows the...
In microbiome/microbiomeold: Tools for microbiome analysis
Description
Usage
Arguments
Value
Author(s)
References
Examples
Description
Arguments:
Usage
1
Bagged.RDA(X, Y, boot = 1000)
Arguments
X
a matrix, samples on columns, variables (bacteria) on rows.
Y
vector with names(Y)=rownames(X), for example
boot
Number of bootstrap iterations
Returns:
Value
List with items:
loadings: bagged loadings
scores: bagged scores
significance: significances of X variables
etc. TBA.
Author(s)
Contact: Jarkko Salojarvi microbiome-admin@googlegroups.com
References
See citation("microbiome")
Examples
1
# NOT RUN data(peerj32); x <- as.matrix(peerj32$microbes)[1:20, 1:6]; y <- rnorm(nrow(x)); names(y) <- rownames(x); res <- Bagged.RDA(x, y , boot = 5)
microbiome/microbiomeold documentation built on May 22, 2019, 9:57 p.m.
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Description Usage Arguments Value Author(s) References Examples
Description
Arguments:
Usage
1 | Bagged.RDA(X, Y, boot = 1000)
|
Arguments
X |
a matrix, samples on columns, variables (bacteria) on rows. |
Y |
vector with names(Y)=rownames(X), for example |
boot |
Number of bootstrap iterations Returns: |
Value
List with items: loadings: bagged loadings scores: bagged scores significance: significances of X variables etc. TBA.
Author(s)
Contact: Jarkko Salojarvi microbiome-admin@googlegroups.com
References
See citation("microbiome")
Examples
1 | # NOT RUN data(peerj32); x <- as.matrix(peerj32$microbes)[1:20, 1:6]; y <- rnorm(nrow(x)); names(y) <- rownames(x); res <- Bagged.RDA(x, y , boot = 5)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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