API for microbiome/microbiomeold
Tools for microbiome analysis

Global functions
.onAttach	Source code
Bagged.RDA	Man page Source code
Bagged.RDA.Feature.Selection	Man page Source code
Core2D	Man page Source code
GKtau	Man page Source code
GetPhylogeny	Man page Source code
PhylotypeRatios	Man page Source code
PlotBaggedRDA	Man page Source code
bootstrap.microbecount	Man page Source code
bootstrap.microbes	Man page Source code
calculate.hclust	Man page Source code
check.anova	Man page Source code
check_wilcoxon	Man page Source code
cmat2table	Man page Source code
coefficient.of.bimodality	Man page Source code
convert4corrwscatter	Man page Source code
core.sum	Man page Source code
core.which	Man page Source code
core_heatmap	Man page Source code
correlation.heatmap	Man page Source code
createCore	Man page Source code
cross.correlate	Man page Source code
densityplot	Man page Source code
distance.matrix	Man page Source code
estimate_stability	Man page
estimate_variability	Man page Source code
get.file.level	Source code
get.file.method	Source code
get.probeset	Man page Source code
htree.plot	Man page Source code
impute	Man page Source code
intermediate_stability	Man page
level1TOlevel0	Man page Source code
level2TOlevel0	Man page Source code
level2TOlevel1	Man page Source code
levelmap	Man page Source code
list.color.scales	Man page Source code
list_prevalent_groups	Man page
lower.triangle	Man page Source code
make.abundancy.table	Man page Source code
matrix.padjust	Man page Source code
microbiome	Man page
microbiome-package	Man page
oligoTOhigher	Man page Source code
peerj32	Man page
phylo.barplot	Man page Source code
plot_cumulative	Man page Source code
polish.phylogeny.info	Man page Source code
prevalence	Man page
project.data	Man page Source code
read.profiling	Man page Source code
relative.abundance	Man page Source code
retrieve.probesets	Man page Source code
roc	Man page Source code
roc.auc	Man page Source code
roc.auc.matrix	Man page Source code
roc.plot	Man page Source code
species2levels	Man page Source code
variability_individual	Man page