PhylotypeRatios: PhylotypeRatios
In microbiome/microbiomeold: Tools for microbiome analysis
Description
Usage
Arguments
Value
Author(s)
References
Examples
Description
Calculate phylotype ratios (eg. Bacteroides vs. Prevotella etc.)
for a given phylotypes vs. samples matrix
Usage
1
PhylotypeRatios(dat)
Arguments
dat
phylotypes vs. samples data matrix in log10 scale
Value
phylotype pairs x samples matrix indicating the ratio
(in log10 domain) between each unique pair
Author(s)
Leo Lahti microbiome-admin@googlegroups.com
References
See citation('microbiome')
Examples
1
2
data(peerj32)
ratios <- PhylotypeRatios(peerj32$microbes)
microbiome/microbiomeold documentation built on May 22, 2019, 9:57 p.m.
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Description Usage Arguments Value Author(s) References Examples
Description
Calculate phylotype ratios (eg. Bacteroides vs. Prevotella etc.) for a given phylotypes vs. samples matrix
Usage
1 | PhylotypeRatios(dat)
|
Arguments
dat |
phylotypes vs. samples data matrix in log10 scale |
Value
phylotype pairs x samples matrix indicating the ratio (in log10 domain) between each unique pair
Author(s)
Leo Lahti microbiome-admin@googlegroups.com
References
See citation('microbiome')
Examples
1 2 | data(peerj32)
ratios <- PhylotypeRatios(peerj32$microbes)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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