levelmap: levelmap
In microbiome/microbiomeold: Tools for microbiome analysis
Description
Usage
Arguments
Value
Author(s)
References
Examples
Description
Map phylotypes between hierarchy levels
Usage
1
Arguments
phylotypes
phylotypes to convert;
if NULL then considering all phylotypes in the phylogeny.info
level.from
convert from
Options: 'L0', 'L1', 'L2', 'species', 'oligo'
level.to
conver to Options: 'L0', 'L1', 'L2', 'species', 'oligo'
phylogeny.info
phylogeny.info
Value
mappings
Author(s)
Contact: Leo Lahti microbiome-admin@googlegroups.com
References
See citation('microbiome')
Examples
1
2
phylogeny.info <- GetPhylogeny('HITChip', 'filtered')
levelmap(phylotypes = 'Akkermansia', 'L2', 'L1', phylogeny.info)
microbiome/microbiomeold documentation built on May 22, 2019, 9:57 p.m.
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Description Usage Arguments Value Author(s) References Examples
Description
Map phylotypes between hierarchy levels
Usage
1 |
Arguments
phylotypes |
phylotypes to convert; if NULL then considering all phylotypes in the phylogeny.info |
level.from |
convert from Options: 'L0', 'L1', 'L2', 'species', 'oligo' |
level.to |
conver to Options: 'L0', 'L1', 'L2', 'species', 'oligo' |
phylogeny.info |
phylogeny.info |
Value
mappings
Author(s)
Contact: Leo Lahti microbiome-admin@googlegroups.com
References
See citation('microbiome')
Examples
1 2 | phylogeny.info <- GetPhylogeny('HITChip', 'filtered')
levelmap(phylotypes = 'Akkermansia', 'L2', 'L1', phylogeny.info)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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