get.probeset: get probeset data matrix

In microbiome/microbiomeold: Tools for microbiome analysis

Description

get probeset data matrix

Usage

get.probeset(name, level, phylogeny.info, probedata, log10 = TRUE)

Arguments

name	name
level	taxonomic level
phylogeny.info	phylogeny.info
probedata	oligos vs. samples preprocessed data matrix; absolute scale
log10	Logical. Logarithmize the data TRUE/FALSE

Value

probeset data matrix

Author(s)

Contact: Leo Lahti [e-mail]

References

See citation('microbiome')

Examples

phylogeny.info <- GetPhylogeny('HITChip', 'filtered')
  data.dir <- system.file("extdata", package = "microbiome")
  probedata <- read.profiling("oligo", data.dir = data.dir)
  ps <- get.probeset('Akkermansia', 'L2', phylogeny.info, probedata)

microbiome/microbiomeold documentation built on May 22, 2019, 9:57 p.m.