plot_cumulative: plot_cumulative

In microbiome/microbiomeold: Tools for microbiome analysis

Description

Plot cumulative core microbiota.

Usage

plot_cumulative(d.sub, i.set = NULL, type = "cumulative", ylim = NULL,
  phylogeny.info)

Arguments

d.sub	d.sub
i.set	i.set
type	plot type
ylim	y axis limits
phylogeny.info	phylogeny.info matrix

Value

Used for side-effects (plot)

Author(s)

Contact: Jarkko Salojarvi [e-mail]

References

The core microbiota bootstrap method implemented with this function: Salonen A, Salojarvi J, Lahti L, de Vos WM. The adult intestinal core microbiota is determined by analysis depth and health status. Clinical Microbiology and Infection 18(S4):16-20, 2012

To cite this R package, see citation("microbiome")

Examples

## Not run: 
  data(peerj32)
  bs <- bootstrap.microbes(t(peerj32$microbes), Nboot = 5);
  phylogeny.info <- GetPhylogeny("HITChip")
  plot_cumulative(bs, phylogeny.info = phylogeny.info)

## End(Not run)

microbiome/microbiomeold documentation built on May 22, 2019, 9:57 p.m.