make.abundancy.table: make.abundancy.table
In microbiome/microbiomeold: Tools for microbiome analysis
Description
Usage
Arguments
Value
Author(s)
References
Examples
Description
Calculate abundancies
Discretize Hitchip matrix to form abundancy table
of form j, nj where j is number of counts and nj is number
of phylotypes with the corresponding counts
this format is often required by richness estimation
Usage
1
make.abundancy.table(dat, det.th, discretization.resolution = 1)
Arguments
dat
data matrix
det.th
detection threshold
discretization.resolution
discretization resolution
Value
abundancy table
Author(s)
Contact: Leo Lahti microbiome-admin@googlegroups.com
References
To cite the microbiome R package, see citation('microbiome')
Examples
1
2
data(peerj32)
abtab <- make.abundancy.table(10^t(peerj32$microbes), det.th = 0)
microbiome/microbiomeold documentation built on May 22, 2019, 9:57 p.m.
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Description Usage Arguments Value Author(s) References Examples
Description
Calculate abundancies Discretize Hitchip matrix to form abundancy table of form j, nj where j is number of counts and nj is number of phylotypes with the corresponding counts this format is often required by richness estimation
Usage
1 | make.abundancy.table(dat, det.th, discretization.resolution = 1)
|
Arguments
dat |
data matrix |
det.th |
detection threshold |
discretization.resolution |
discretization resolution |
Value
abundancy table
Author(s)
Contact: Leo Lahti microbiome-admin@googlegroups.com
References
To cite the microbiome R package, see citation('microbiome')
Examples
1 2 | data(peerj32)
abtab <- make.abundancy.table(10^t(peerj32$microbes), det.th = 0)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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