phylo.barplot: phylo.barplot

In microbiome/microbiomeold: Tools for microbiome analysis

Description

Barplot for *ITChip sample (across taxa) with higher-level taxonomic groups indicated by colours.

Usage

phylo.barplot(x, color.level = "L1", phylogeny.info = NULL, title = NULL,
  plot = TRUE, sort = TRUE)

Arguments

x	Data vector across taxa (each element should be named by taxon)
color.level	Higher-order phylogenetic level to indicate by colors
phylogeny.info	oligo-phylotype mappings
title	title
plot	draw plot TRUE/FALSE
sort	sort the effects by magnitude

Value

ggplot2 object

Author(s)

Contact: Leo Lahti [e-mail]

References

See citation('microbiome')

Examples

data(peerj32)
  phylogeny.info <- GetPhylogeny('HITChip', 'filtered')
  signal <- unlist(peerj32$microbes[1, 1:10])
  p <- phylo.barplot(signal, 'L1', phylogeny.info)

microbiome/microbiomeold documentation built on May 22, 2019, 9:57 p.m.