calculate.hclust: calculate.hclust

Description Usage Arguments Value Author(s) References Examples

View source: R/utils.R

Description

Calculate hierarchical clustering for standard selections in profiling script

Usage

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calculate.hclust(dat, method = "complete", metric = "pearson")

Arguments

dat

data matrix (use log10 with pearson!)

method

hierarchical clustering method (see ?hclust)

metric

clustering metrics (spearman / pearson / euclidean)

Value

hclust object for log10 and for absolute scale data

Author(s)

Contact: Leo Lahti [email protected]

References

See citation('microbiome')

Examples

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data(peerj32)
  dat <- peerj32$microbes
  hc <- calculate.hclust(dat, 'complete', 'pearson')

microbiome/microbiomeold documentation built on May 22, 2019, 9:57 p.m.