calculate.hclust: calculate.hclust

In microbiome/microbiomeold: Tools for microbiome analysis

Description

Calculate hierarchical clustering for standard selections in profiling script

Usage

calculate.hclust(dat, method = "complete", metric = "pearson")

Arguments

dat	data matrix (use log10 with pearson!)
method	hierarchical clustering method (see ?hclust)
metric	clustering metrics (spearman / pearson / euclidean)

Value

hclust object for log10 and for absolute scale data

Author(s)

Contact: Leo Lahti [e-mail]

References

See citation('microbiome')

Examples

data(peerj32)
  dat <- peerj32$microbes
  hc <- calculate.hclust(dat, 'complete', 'pearson')

microbiome/microbiomeold documentation built on May 22, 2019, 9:57 p.m.