PlotBaggedRDA: Description: Bagged RDA visualization

In microbiome/microbiomeold: Tools for microbiome analysis

Description

Arguments:

Usage

PlotBaggedRDA(Bag.res, Y, which.bac = 1:nrow(Bag.res$loadings),
  ptype = "spider", comp = 1:2, cex.bac = 0.5, plot.names = T,
  group.cols = as.numeric(unique(Y)), ...)

Arguments

Bag.res	Output from Bagged.RDA.Feature.Selection function
Y	vector with names(Y)=rownames(X), for example
which.bac	TBA
ptype	TBA
comp	TBA
cex.bac	TBA
plot.names	Plot names
group.cols	TBA
...	Other arguments to be passed Returns:

Value

TBA

Author(s)

Contact: Jarkko Salojarvi [e-mail]

References

See citation("microbiome")

Examples

#
  #library(microbiome)
  #data(peerj32)
  #x <- t(peerj32$microbes)
  #y <- factor(peerj32$meta$time); names(y) <- rownames(peerj32$meta)
  #Bag.res <- Bagged.RDA.Feature.Selection(x, y, sig.thresh=0.05, nboot=100)
  #PlotBaggedRDA(Bag.res, y)

microbiome/microbiomeold documentation built on May 22, 2019, 9:57 p.m.