Files in mworkentine/mattsUtils
Personal Utility Functions For Various Analysis
.Rbuildignore
.gitignore
DESCRIPTION
LICENCE
NAMESPACE
R/cnetggplot.R
R/get_monophyletic_subsets.R
R/ggheatmap.R
R/mattsUtils.R
R/microbiome_helpers.R
R/prevalance_filtering.R
R/print_table.R
R/rnaseq_helpers.R
R/tidy_phyloseq.R
R/upload_and_share.R
README.md
inst/rmarkdown/templates/ucvm_project/skeleton/resources/UC-vet_med-rgb-400.png
inst/rmarkdown/templates/ucvm_project/skeleton/resources/header.html
inst/rmarkdown/templates/ucvm_project/skeleton/resources/plos.csl
inst/rmarkdown/templates/ucvm_project/skeleton/resources/references.bib
inst/rmarkdown/templates/ucvm_project/skeleton/resources/style.css
inst/rmarkdown/templates/ucvm_project/skeleton/skeleton.Rmd
inst/rmarkdown/templates/ucvm_project/template.yaml
man/add_taxonomy_column.Rd
man/cluster_order.Rd
man/cnetggplot.Rd
man/compute_spia.Rd
man/get_monophyletic_subsets.Rd
man/get_richness.Rd
man/get_seq_stats.Rd
man/get_sig_taxa.Rd
man/ggheatmap.Rd
man/lfc_plot.Rd
man/make_heatmap.Rd
man/make_ordination_plots.Rd
man/make_prev_df.Rd
man/make_taxa_colours.Rd
man/mattsUtils.Rd
man/plotPCA2.Rd
man/plot_OTUs.Rd
man/plot_bar2.Rd
man/plot_diagnositics.Rd
man/plot_featureCount_stats.Rd
man/plot_genus_by_phylum.Rd
man/plot_num_seqs.Rd
man/prev_filt.Rd
man/prev_plot.Rd
man/print_table.Rd
man/psmelt_dplyr.Rd
man/replace_counts.Rd
man/rlog_norm_otus.Rd
man/run_spia.Rd
man/single_gene_plot.Rd
man/subset_samples_safe.Rd
man/subset_taxa_safe.Rd
man/summarize_taxonomy.Rd
man/tidy_phyloseq.Rd
man/upload_and_share.Rd
man/veganotu.Rd
man/vst_transform.Rd
mattsUtils.Rproj
tests/testthat.R
tests/testthat/dmelanogasterkeggSPIA.RData
tests/testthat/dmelanogasterreactomeSPIA.RData
tests/testthat/rnaseq_test_data.rda
tests/testthat/spia_res_dmelanogaster_kegg.rds
tests/testthat/spia_res_dmelanogaster_reactome.rds
tests/testthat/test_monophyletic_subsets.R
tests/testthat/test_rnaseq_helpers.R
